{ "_id": "6a13ffb2acfb0bcc41d37be3", "Package": "bmscstan", "Type": "Package", "Title": "Bayesian Multilevel Single Case Models using 'Stan'", "Version": "1.2.1.0", "Authors@R": "person(\"Michele\", \"Scandola\", email = \"michele.scandola@univr.it\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0853-8975\"))", "Description": "Analyse single case analyses against a control group. Its\npurpose is to provide a flexible, with good power and low first\ntype error approach that can manage at the same time controls'\nand patient's data. The use of Bayesian statistics allows to\ntest both the alternative and null hypothesis. Scandola, M., &\nRomano, D. (2020, August 3). \nScandola, M., & Romano, D. (2021).\n.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "knitr", "URL": "https://github.com/michelescandola/bmscstan", "BugReports": "https://github.com/michelescandola/bmscstan", "RoxygenNote": "7.2.1", "Config/pak/sysreqs": "make libicu-dev", "Repository": "https://michelescandola.r-universe.dev", "Date/Publication": "2022-09-04 12:39:37 UTC", "RemoteUrl": "https://github.com/michelescandola/bmscstan", "RemoteRef": "HEAD", "RemoteSha": "368cb7e24bef70058d2828996038cd7cd1311e07", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 07:48:00 UTC", "User": "root" }, "Author": "Michele Scandola [aut, cre] (ORCID:\n)", "Maintainer": "Michele Scandola ", "MD5sum": "758ff4cfe69fa8058e5f3b99e7462411", "_user": "michelescandola", "_type": "src", "_file": "bmscstan_1.2.1.0.tar.gz", "_fileid": "bf6d5807caf752706ddb4d2593a8c74a7e283fe17f1613ceb9e7121d29603cbd", "_filesize": 241665, "_sha256": "bf6d5807caf752706ddb4d2593a8c74a7e283fe17f1613ceb9e7121d29603cbd", "_created": "2026-05-25T07:48:00.000Z", "_published": "2026-05-25T07:52:18.182Z", "_distro": "noble", "_jobs": [ { "job": 77676036080, "time": 225, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7194035929" }, { "job": 77676036074, "time": 221, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7194034519" }, { "job": 77676036085, "time": 183, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7194015972" }, { "job": 77676036089, "time": 155, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7194012885" }, { "job": 77675572073, "time": 224, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7193976420" }, { "job": 77676036063, "time": 142, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7194013549" }, { "job": 77676036065, "time": 191, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7194026983" }, { "job": 77676036078, "time": 167, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7194020675" }, { "job": 77676036068, "time": 164, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7194019742" } ], "_buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/michelescandola/bmscstan", "_commit": { "id": "368cb7e24bef70058d2828996038cd7cd1311e07", "author": "michelescandola ", "committer": "michelescandola ", "message": "update of HTML tags to be consistent with HTML5 version. In particular, we had to remove the
tag, whose presence invalidated the whole submission to CRAN!\n", "time": 1662295177 }, "_maintainer": { "name": "Michele Scandola", "email": "michele.scandola@univr.it", "orcid": "0000-0003-0853-8975" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rstan", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "bayesplot", "role": "Depends" }, { "package": "loo", "role": "Imports" }, { "package": "logspline", "role": "Imports" }, { "package": "LaplacesDemon", "role": "Imports" }, { "package": "reshape2", "role": "Suggests" }, { "package": "gridExtra", "role": "Suggests" }, { "package": "bridgesampling", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "covr", "role": "Suggests" } ], "_owner": "michelescandola", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "single-case-analysis" ], "_stars": 5, "_contributors": [ { "user": "michelescandola", "count": 33, "uuid": 11228620 } ], "_userbio": { "uuid": 11228620, "type": "user", "name": "michelescandola" }, "_downloads": { "count": 274, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bmscstan" }, "_devurl": "https://github.com/michelescandola/bmscstan", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/bmscstan.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/michelescandola/bmscstan", "_realowner": "michelescandola", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2020-09-07" }, { "version": "1.1.0", "date": "2020-11-08" }, { "version": "1.2.1.0", "date": "2022-09-04" } ], "_exports": [ "BMSC", "BMSC_loo", "BMSC_loo_compare", "BMSC_mcse_loo", "BMSC_pareto_k_ids", "BMSC_pareto_k_influence_values", "BMSC_pareto_k_table", "BMSC_pareto_k_values", "BMSC_psis_n_eff_values", "BMSC_waic", "pairwise.BMSC" ], "_datasets": [ { "name": "data.ctrl", "title": "Data from a control group of 16 participants", "object": "BSE", "class": [ "data.frame" ], "fields": [ "RT", "Body.District", "Congruency", "Side", "ID" ], "rows": 4049, "table": true, "tojson": true }, { "name": "data.pt", "title": "Data from a Single Case with brachial plexious lesion", "object": "BSE", "class": [ "data.frame" ], "fields": [ "RT", "Body.District", "Congruency", "Side" ], "rows": 467, "table": true, "tojson": true } ], "_help": [ { "page": "BMSC", "title": "Fit Bayesian Multilevel Single Case models", "topics": [ "BMSC" ] }, { "page": "BMSC_loo", "title": "loo and waic.", "topics": [ "BMSC_loo", "BMSC_waic", "plot.loo_BMSC", "print.loo_BMSC", "print.waic_BMSC" ] }, { "page": "BMSC_loo_compare", "title": "bmscstan wrapper for model comparison.", "topics": [ "BMSC_loo_compare", "print.loo_compare_BMSC", "print.waic_compare_BMSC" ] }, { "page": "BMSC_pareto_k_table", "title": "bmscstan wrapper for diagnostics for Pareto smoothed importance sampling (PSIS)", "topics": [ "BMSC_mcse_loo", "BMSC_pareto_k_ids", "BMSC_pareto_k_influence_values", "BMSC_pareto_k_table", "BMSC_pareto_k_values", "BMSC_psis_n_eff_values", "print.mcse_loo_BMSC", "print.pareto_k_ids_BMSC", "print.pareto_k_influence_values_BMSC", "print.pareto_k_table_BMSC", "print.pareto_k_values_BMSC", "print.psis_n_eff_values_BMSC" ] }, { "page": "bmscstan", "title": "Bayesian Multilevel Single Case models using 'Stan'", "topics": [ "bmscstan" ] }, { "page": "data.ctrl", "title": "Data from a control group of 16 participants", "topics": [ "data.ctrl" ] }, { "page": "data.pt", "title": "Data from a Single Case with brachial plexious lesion", "topics": [ "data.pt" ] }, { "page": "pairwise.BMSC", "title": "Pairwise contrasts", "topics": [ "pairwise.BMSC" ] }, { "page": "plot.BMSC", "title": "Plot estimates from a 'BMSC' object.", "topics": [ "plot.BMSC" ] }, { "page": "plot.pairwise.BMSC", "title": "Plot estimates from a 'pairwise.BMSC' object.", "topics": [ "plot.pairwise.BMSC" ] }, { "page": "pp_check.BMSC", "title": "Posterior predictive check for BMSC objects", "topics": [ "pp_check.BMSC" ] }, { "page": "print.pairwise.BMSC", "title": "Print summaries of Pairwise Bayesian Multilevel Single Case objects", "topics": [ "print.pairwise.BMSC" ] }, { "page": "print.summary.BMSC", "title": "Print summaries of Bayesian Multilevel Single Case objects", "topics": [ "print.summary.BMSC" ] }, { "page": "random_effects", "title": "Random Effects specification on Bayesian Multilevel Single Case models using 'Stan'", "topics": [ "randomeffect" ] }, { "page": "summary.BMSC", "title": "Summarizing Bayesian Multilevel Single Case objects", "topics": [ "summary.BMSC" ] } ], "_readme": "https://github.com/michelescandola/bmscstan/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "bayesplot", "BH", "callr", "checkmate", "cli", "cpp11", "desc", "distributional", "dplyr", "farver", "generics", "ggplot2", "ggridges", "glue", "gridExtra", "gtable", "inline", "isoband", "labeling", "LaplacesDemon", "lifecycle", "logspline", "loo", "magrittr", "matrixStats", "numDeriv", "pillar", "pkgbuild", "pkgconfig", "plyr", "posterior", "processx", "ps", "purrr", "QuickJSR", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "RcppParallel", "reshape2", "rlang", "rstan", "S7", "scales", "StanHeaders", "stringi", "stringr", "tensorA", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "bmscstan-use.Rmd", "filename": "bmscstan-use.html", "title": "Fitting Bayesian Multilevel Single Case models using bmscstan", "author": "Michele Scandola", "engine": "knitr::rmarkdown", "headings": [ "Example on real data", "Explore the data", "Deciding the contrasts and the random effects part", "Fitting the BMSC model", "The summary.BMSC output", "Understanding the summary.BMSC output", "Checking the diagnostic indexes", "The Control Group results", "The differences between the Control Group and the Single Case", "The Body District : Congruency interaction:", "The Body District : Congruency : Side interaction:", "Efficient approximate leave-one-out cross-validation for fitted BMSC models", "A binomial case", "Conclusions", "References" ], "created": "2020-08-04 16:05:11", "modified": "2022-09-04 10:33:15", "commits": 8 } ], "_score": 4.3979400086720375, "_indexed": true, "_nocasepkg": "bmscstan", "_universes": [ "michelescandola" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.1.0", "date": "2026-05-25T07:50:46.000Z", "distro": "noble", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "3bc51d8fb5cb34d5ee321eb196ee1c3a497b5b0442ac65e962d81113ac28790d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.6.0", "os": "linux", "version": "1.2.1.0", "date": "2026-05-25T07:50:38.000Z", "distro": "noble", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "23e97196575faa6e0caedbb5e1888504532368c05a158a319eb66ad2d0d0332e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.5.3", "os": "mac", "version": "1.2.1.0", "date": "2026-05-25T07:50:04.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "937bd8bf5e7b27fac97fff95a77eff3d69192ec9e3870fea46f7f13d1d03c2f4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.6.0", "os": "mac", "version": "1.2.1.0", "date": "2026-05-25T07:49:54.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "39bc057edb692b408806f334b4d74de434e950c9f10dc2731d3b0f51deb41d1a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.1.0", "date": "2026-05-25T07:50:38.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "fb562b80b219258404e4b8ad2787c3ce79ebb98746b70402e444f020412cfcf2", "status": "success", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.7.0", "os": "win", "version": "1.2.1.0", "date": "2026-05-25T07:49:51.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "079dba3e23c4a99093829d6956f2b8fc92d68b76cf29b8ec0d0e34af96c7c051", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.5.3", "os": "win", "version": "1.2.1.0", "date": "2026-05-25T07:49:28.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "66567628a729fde929ee7945d86c87fe863cc6fde2b04dbf6757bb580a4bee5a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" }, { "r": "4.6.0", "os": "win", "version": "1.2.1.0", "date": "2026-05-25T07:49:29.000Z", "commit": "368cb7e24bef70058d2828996038cd7cd1311e07", "fileid": "a33e4d7a3b6aa66155792422d4e9e8a7459caf9e1d8f76fcbd7707787fd7ca13", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/michelescandola/actions/runs/26389494146" } ] }